PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_A9DA4DCF1.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 945aa    MW: 107270 Da    PI: 6.9641
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_A9DA4DCF1.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.45.7e-1483166190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            k+Y++YA + GFs ++ ks++  ++g + +  + Cs++g+ + +         +r++ +++C a++ +k+++d   ++++ +l+HnH+
  Traes_4DL_A9DA4DCF1.2  83 KYYKQYAADSGFSAVTLKSSYL-KSGVCRRLVLGCSRSGRGRANACY-----LSRETAKINCPARISLKLRQDRWLHIDDAKLDHNHP 164
                            69***********999999887.7888***************99998.....89999**************99999************ PP

                   FAR1  89 la 90 
                            l+
  Traes_4DL_A9DA4DCF1.2 165 LN 166
                            96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-1183166IPR004330FAR1 DNA binding domain
PfamPF105513.0E-24270363IPR018289MULE transposase domain
PROSITE profilePS509669.137557593IPR007527Zinc finger, SWIM-type
SMARTSM005752.7E-5568595IPR006564Zinc finger, PMZ-type
PfamPF044343.6E-6570589IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 945 aa     Download sequence    Send to blast
EAPIEADGKS SEPPGNGSLP KIAEKSQDSG GNPGTELPPL HQGKEVILVD DNDSGQEDGG  60
GAKVDENAPR TGLRFKTYDD ALKYYKQYAA DSGFSAVTLK SSYLKSGVCR RLVLGCSRSG  120
RGRANACYLS RETAKINCPA RISLKLRQDR WLHIDDAKLD HNHPLNQSSD SPMSCYKKLT  180
DAKSVENGSR LKGRRNVPIA DKEQGNFTEI GRLKFGEGDD EQIQKFFGSM QNKNPNFFYL  240
VDLDKQGRLR NLFWSDARSQ AAHEYFGHDV VYFDTSYLTE KYDLPLVFFT GMNNHGQPVL  300
FGTGLLSDLS AESYTWLFRA FLACMKGCYP DAIITEHYNA ILDAVREVFS QVKHRLCLYR  360
IMRDVAENLK AHAEFKTIKR ALKKVTYGSL KPPEFEADWK KVIEEHGLAG NECLSSLHEH  420
RQLWAPAYLK DKFWAGMSVS QRGESVASYY DGFVYPKTSL KQFFSKYEMI LENKYKKELQ  480
ADEESSHRTP LTVTKFYMEE QLAKAYTINM FRKFQEELKA TMYCDGMPSK VDGPFVTFEV  540
KECSYMEDGK ETESRTYEVY FCKEGLIVEC ECGFFQFTGI LCRHALSVFK LHDMFEIPSR  600
YVLDRWKRDY KKLHALAHYP NEMLLGDTVE RHDYLSTQCR QVLNLGFISE SRYLVALKLL  660
REAERALLDD GQPARDRQPR LLSFEADAPE NGQGLFSSQF PEGEKNSLST NAKHPGRPAK  720
KVAETNPDAV LRSNKEQDFL RSSFVPTETN MIQGTSSGSH LESPDMGVPG SIHLMEGISP  780
NLTFGPHFGM DVSHQHQLPN QPRMMPNNFM QVQADPHVFG NQWAYNPTMQ VCPHTNVYPF  840
FLAASKIIIQ CFKLHATPCL CPCSHFLLHG PCLRPCSDME FHQSMDLSNI FGLLVATQTH  900
IVQGFSCSSF SSLIYYDFQQ MCTIINLCSL SNVIITHIEH LKNYC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572701.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_014756995.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLW5EKK60.0W5EKK6_WHEAT; Uncharacterized protein
STRINGMLOC_80133.40.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-121FAR1-related sequence 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]